IBIOS/BMMB
551: Genomics Fall
2007
M
W F 10:10-11am, 108 Wartik
|
Date |
Class |
Topic |
Instructor |
|
Aug 27 M |
1 |
Introduction to Genomics |
Schuster |
|
Aug 29 W |
2 |
Microbial genomes: Annotation |
Schuster |
|
Aug 31 F |
3 |
Microbial genomes: Comparative genomics |
Schuster |
|
Sep 03 M |
|
Labor Day Holiday |
|
|
Sep 05 W |
4 |
Microbial genomes: Comparative genomics |
Schuster |
|
Sep 07 F |
5 |
Microbial genomes: New technologies |
Schuster |
|
Sep 10 M |
6 |
Metagenomics |
Schuster |
|
Sep 12 W |
7 |
Types of genomic data, Browser and Galaxy |
Hardison |
|
Sep 14 F |
8 |
Analysis tools in Genomics: Galaxy |
Nekrutenko |
|
Sep 17 M |
9 |
Sequence analysis |
Hardison |
|
Sep 19 W |
10 |
Sequence analysis |
Hardison |
|
Sep 21 F |
11 |
Genome data analysis |
Hardison |
|
Sep 24 M |
12 |
Evolutionary Genomics 1 |
Akashi |
|
Sep 26 W |
13 |
Evolutionary Genomics 2 |
Akashi |
|
Sep 28 F |
14 |
Evolutionary Genomics 3 |
Akashi |
|
Oct 01 M |
15 |
Evolutionary Genomics 4 |
Akashi |
|
Oct 03 W |
16 |
Evolutionary Genomics 5 |
Akashi |
|
Oct 05 F |
17 |
Vertebrate genomes: Assembly, Landscape |
Hardison |
|
Oct 08 M |
18 |
Vertebrate genomes: Variation in Landscape |
Hardison |
|
Oct 10 W |
19 |
Gene prediction (ab initio methods) |
Hardison |
|
Oct 12 F |
20 |
Gene annotation |
Hardison |
|
Oct 15 M |
21 |
Vertebrate genomes: Constraint and function |
Hardison |
|
Oct 17 W |
22 |
Vertebrate genomes: Constraint and function |
Hardison |
|
Oct 19 F |
23 |
Vertebrate genomes: Regulatory elements |
Hardison |
|
Oct 22 M |
24 |
Mutations and phenotype: mouse model |
Shashikant |
|
Oct 24 W |
25 |
Transgenic technologies |
Shashikant |
|
Oct 26 F |
26 |
Gene targeting |
Shashikant |
|
Oct 29 M |
27 |
Large scale mutagenesis |
Shashikant |
|
Oct 31 W |
28 |
Cloning |
Shashikant |
|
Nov 02 F |
29 |
Functional genomics and genetics |
Cheng |
|
Nov 05 M |
30 |
Functional genomics and human variation |
Cheng |
|
Nov 07 W |
31 |
Human variation and signs of selection |
Hardison |
|
Nov 09 F |
32 |
Epigenetics |
Carrel |
|
Nov 12 M |
33 |
Epigenetics |
Carrel |
|
Nov 14 W |
34 |
Epigenetics |
Carrel |
|
Nov 16 F |
35 |
Gene expression: Microarray technologies |
Hardison |
|
Nov 19-23 |
|
Thanksgiving Holiday |
|
|
Nov 26 M |
36 |
Gene expression: Clustering analysis |
Hardison |
|
Nov 28 W |
37 |
Gene expression: Clustering analysis |
Hardison |
|
Nov 30 F |
38 |
Gene expression: Discuss assignment |
Hardison |
|
Dec 03 M |
39 |
Gene expression: Tiling arrays, sequence tags |
Hardison |
|
Dec 05 W |
40 |
Gene expression: Chromatin marks |
Hardison |
|
Dec 07 F |
41 |
Human evolutionary genomics |
Weiss |
|
Dec 10 M |
42 |
Basic questions in biomedical genetics |
Weiss |
|
Dec 12 W |
43 |
How does the gene affect the trait? |
Weiss |
|
Dec 14 F |
44 |
A developmental perspective on genetic basis of complex traits |
Weiss |
|
Dec 17-21 |
Finals Week |
Grades collated and final grades assigned |
|