gi|1790436 >gi|1790436 (AE000473) o465 [Escherichia coli]
Length = 465
Score = 125 bits (310), Expect = 6e-30
Identities = 77/236 (32%), Positives = 124/236 (51%), Gaps = 7/236 (2%)
Query 38 HRQTTEKLQAVQQDLVQANRLAILGQVAAGVAHEINQPVATIRAYADNARTFLHRGQTVT 97
+R+ Q +Q ++ + +L LG +AAGVAHEI P+++I+ A + F R
Sbjct 222 YRRYLRSRQLLQDEMKRKEKLVALGHLAAGVAHEIRNPLSSIKGLA---KYFAERAPAGG 278
Query 98 AAENMESI-AELTERVGAITDELRRFARKGHFAAGPTAMKEVVEGALMLLRSRFAGRMDA 156
A + + A+ +R+ + EL + H A + ++ +L L+ R
Sbjct 279 EAHQLAQVMAKEADRLNRVVSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQ 338
Query 157 IRLDLPPDGLQALGNRIRLEQVLINLLQNALEAIGDSEDGAIQVRCEEAAGGIALTVADN 216
+R + + RL QVL+NL NA++AIG + G I V E+ G+ ++V D+
Sbjct 339 LRFTANDTLPEIQADPDRLTQVLLNLYLNAIQAIG--QHGVISVTASESGAGVKISVTDS 396
Query 217 GPGIAADVREELFTPFNTSKEDGLGLGLAISKEIVSDYGGTIEVESGP-SGTTFAV 271
G GIAAD + +FTP+ T+K +G GLGLA+ IV +GGTI+V S G+TF +
Sbjct 397 GKGIAADQLDAIFTPYFTTKAEGTGLGLAVVHNIVEQHGGTIQVASQEGKGSTFTL 452
gi|1788549 >gi|1788549 (AE000311) sensor protein AtoS [Escherichia
coli]
Length = 608
Score = 106 bits (262), Expect = 2e-24
Identities = 76/229 (33%), Positives = 126/229 (54%), Gaps = 11/229 (4%)
Query 49 QQDLVQANRLAILGQVAAGVAHEINQPVATIRAYADNARTFLHRGQTVTAAENMESIAEL 108
Q+ + QA RLA LG++ AGVAHE+ P+ IR Y R + E + + +
Sbjct 377 QRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILR---QQTSDPIHQEYLSVVLKE 433
Query 109 TERVGAITDELRRFARKGHFAAGPTAMKEVVEGALMLLRSR-FAGRMDAI-RLDLPPDGL 166
+ + + +L F+R H ++ +VE L+L+++ R+D I LD +
Sbjct 434 IDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSPI 493
Query 167 QALGNRIRLEQVLINLLQNALEAIGDSEDGAIQVRCEEAAGGI-ALTVADNGPGIAADVR 225
A +R L+QVL+N+L NA++AI S G I+++ + + A+++ DNG GI ++
Sbjct 494 NA--DRELLKQVLLNILINAVQAI--SARGKIRIQTWQYSDSQQAISIEDNGCGIDLSLQ 549
Query 226 EELFTPFNTSKEDGLGLGLAISKEIVSDYGGTIEVESGPS-GTTFAVNL 273
+++F PF T+K G GLGLA+S+ I++ + G I V S P G TF + L
Sbjct 550 KKIFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLIL 598
gi|1790300 >gi|1790300 (AE000462) f349; 100 pct identical to
NTRB_ECOLI SW: P06712; CG Site No. 701 [Escherichia coli]
Length = 349
Score = 82.7 bits (201), Expect = 3e-17
Identities = 71/243 (29%), Positives = 113/243 (46%), Gaps = 34/243 (13%)
Query 49 QQDLVQANRLAILGQVAAGVAHEINQPVATIRAYADNARTFLHRGQTVTAAENMESIAEL 108
Q+ L A ++A V G+AHEI P+ +R A Q ++ A S+ E
Sbjct 119 QEQLQHAQQVAARDLVR-GLAHEIKNPLGGLRGAA----------QLLSKALPDPSLLEY 167
Query 109 TERVGAITDELRRFARKGHFAAGP--------TAMKEVVEGALMLLRSRFAGRMDAIRLD 160
T+ + D LR + GP ++ +V E + L+ + IR D
Sbjct 168 TKVIIEQADRLRNLVDR---LLGPQLPGTRVTESIHKVAERVVTLVSMELPDNVRLIR-D 223
Query 161 LPPDGLQALGNRIRLEQVLINLLQNALEAIGDSEDGAIQVRCEEAAG----------GIA 210
P + + ++EQVL+N+++NAL+A+G E G I +R A
Sbjct 224 YDPSLPELAHDPDQIEQVLLNIVRNALQALG-PEGGEIILRTRTAFQLTLHGERYRLAAR 282
Query 211 LTVADNGPGIAADVREELFTPFNTSKEDGLGLGLAISKEIVSDYGGTIEVESGPSGTTFA 270
+ V DNGPGI +++ LF P + +E G GLGL+I++ ++ + G IE S P T F+
Sbjct 283 IDVEDNGPGIPPHLQDTLFYPMVSGREGGTGLGLSIARNLIDQHSGKIEFTSWPGHTEFS 342
Query 271 VNL 273
V L
Sbjct 343 VYL 345
gi|1788393 >gi|1788393 (AE000297) sensor protein BaeS [Escherichia
coli]
Length = 467
Score = 79.6 bits (193), Expect = 3e-16
Identities = 75/266 (28%), Positives = 115/266 (43%), Gaps = 46/266 (17%)
Query 21 TRDLRMARDRLETEIADHRQ---TTEKLQAVQQDLVQANRLAILGQVAAGVAHEINQPVA 77
TR + D L D Q T EK Q +++D + A ++HE+ P+A
Sbjct 210 TRVTPTSEDELGKLAQDFNQLASTLEKNQQMRRDFM------------ADISHELRTPLA 257
Query 78 TIR----AYADNARTFLHRGQTVTAAENMESIAELTERVGAIT---DELRRFARKGH--- 127
+R A D R F E++A L VG +T D+L + +
Sbjct 258 VLRGELEAIQDGVRKF-----------TPETVASLQAEVGTLTKLVDDLHQLSMSDEGAL 306
Query 128 -FAAGPTAMKEVVEGALMLLRSRFAGRMDAIRLDLPPDGLQALGNRIRLEQVLINLLQNA 186
+ P + ++E A R RFA R ++ LP D + G+R RL Q+ NLL+N+
Sbjct 307 AYQKAPVDLIPLLEVAGGAFRERFASRGLKLQFSLP-DSITVFGDRDRLMQLFNNLLENS 365
Query 187 LEAIGDSEDGAIQVRCEEAAGGIALTVADNGPGIAADVREELFTPFNTSK------EDGL 240
L G++Q+ + + LT AD+ PG++ D ++LF F ++ G
Sbjct 366 LRYTDSG--GSLQISAGQRDKTVRLTFADSAPGVSDDQLQKLFERFYRTEGSRNRASGGS 423
Query 241 GLGLAISKEIVSDYGGTIEVESGPSG 266
GLGLAI IV + G I P G
Sbjct 424 GLGLAICLNIVEAHNGRIIAAHSPFG 449
gi|1786912 >gi|1786912 (AE000173) sensor protein KdpD [Escherichia
coli]
Length = 894
Score = 67.5 bits (162), Expect = 1e-12
Identities = 63/228 (27%), Positives = 99/228 (42%), Gaps = 18/228 (7%)
Query 49 QQDLVQANRLAILGQVAAGVAHEINQPVATIRAYADNARTFL------HRGQTVTAAENM 102
+Q + + R I + A ++H++ P+ + A+ L H Q A+E
Sbjct 652 EQARMASEREQIRNALLAALSHDLRTPLTVLFGQAEILTLDLASEGSPHARQ---ASEIR 708
Query 103 ESIAELTERVGAITDELRRFARKGHFAAGPTAMKEVVEGALMLLRSRFAGRMDAIRLDLP 162
+ + T V + D R + + ++EVV AL +L G I L LP
Sbjct 709 QHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEP---GLSSPINLSLP 765
Query 163 PDGLQALGNRIRLEQVLINLLQNALEAIGDSEDGAIQVRCEEAAGGIALTVADNGPGIAA 222
+ E+VLINLL+NA++ G + I E + L V DNGPG+
Sbjct 766 EPLTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVE--GENLQLDVWDNGPGLPP 823
Query 223 DVREELFTPFNTSKED----GLGLGLAISKEIVSDYGGTIEVESGPSG 266
+ +F F ++ G+GLGLAI + IV +GGTI + P G
Sbjct 824 GQEQTIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEG 871
gi|1789149 >gi|1789149 (AE000362) sensor protein BarA [Escherichia
coli]
Length = 918
Score = 65.2 bits (156), Expect = 6e-12
Identities = 62/261 (23%), Positives = 124/261 (46%), Gaps = 28/261 (10%)
Query 31 LETEIADHRQTTEKLQAVQQDLVQANRLA-----ILGQVAAGVAHEINQPVATIRAYADN 85
++ +D R+T E+++ +L A + A I + A ++HE+ P+ + +
Sbjct 258 IDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFT-- 315
Query 86 ARTFLHRGQTVTAAENMESIAELTERVGAITDELRRFAR----KGHFAAGPTAMKEVVEG 141
R L T T +++ +I + AI +++ F++ K + P ++ ++
Sbjct 316 -RLTLKTELTPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDE 374
Query 142 ALMLLRSRFAGRMDAIRLDLPPDGLQ-ALGNRIRLEQVLINLLQNALEAIGDSEDGAIQV 200
+ LL + + L++ D +G+ +RL+Q++ NL+ NA++ +E+G I +
Sbjct 375 VVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKF---TENGNIDI 431
Query 201 RCEEAAGG-----IALTVADNGPGIAADVREELFTPFNTS------KEDGLGLGLAISKE 249
E+ A I + + D G GI + LF F + + G GLGL I+++
Sbjct 432 LVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQK 491
Query 250 IVSDYGGTIEVESGPS-GTTF 269
+V++ GG I S P+ G+TF
Sbjct 492 LVNEMGGDISFHSQPNRGSTF 512
gi|1787227 >gi|1787227 (AE000201) sensor protein TorS, histidine
protein kinase [Escherichia coli]
Length = 904
Score = 64.4 bits (154), Expect = 1e-11
Identities = 68/267 (25%), Positives = 111/267 (41%), Gaps = 27/267 (10%)
Query 18 EERTRDLRMARDRLETEIADHRQTTEKLQAVQQDLVQANRLAILGQVAAGVAHEINQPV- 76
E+ ++ L+ + +HRQ + + Q + A L A ++HEI P+
Sbjct 400 EQLAAQVKARTAELQELVIEHRQARAEAEKASQA-----KSAFL----AAMSHEIRTPLY 450
Query 77 ---ATIRAYADNARTFLHRGQTVTAAENMESIAELTERVGAITDELRRFARKGHFAAGPT 133
T + ADN R ++ ES+ + + + + + + P
Sbjct 451 GILGTAQLLADNPALNAQRDDLRAITDSGESLLTILNDILDYS-AIEAGGKNVSVSDEPF 509
Query 134 AMKEVVEGALMLLRSRFAGR----MDAIRLDLPPDGLQALGNRIRLEQVLINLLQNALEA 189
+ ++E L L+ R GR AI D+P +G+ R+ QV+ NLL NAL
Sbjct 510 EPRPLLESTLQLMSGRVKGRPIRLATAIADDMP---CALMGDPRRIRQVITNLLSNALRF 566
Query 190 IGDSEDGAIQVRCEEAAGGIALTVADNGPGIAADVREELFTPFN--TSKEDGLGLGLAIS 247
+++G I +R + V D+G GI E+F PF + K G GLGL IS
Sbjct 567 ---TDEGYIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKRGGTGLGLTIS 623
Query 248 KEIVSDYGGTIEVESGPS-GTTFAVNL 273
+ GG + S P G+ F + L
Sbjct 624 SRLAQAMGGELSATSTPEVGSCFCLRL 650
gi|1790567 >gi|1790567 (AE000485) hypothetical 60.6 kD protein in
dcub-lysu intergenic region [Escherichia coli]
Length = 543
Score = 63.6 bits (152), Expect = 2e-11
Identities = 35/84 (41%), Positives = 49/84 (57%)
Query 181 NLLQNALEAIGDSEDGAIQVRCEEAAGGIALTVADNGPGIAADVREELFTPFNTSKEDGL 240
NL++NALEA+G G I V G + V D+GPGIA D + +F ++K
Sbjct 441 NLIENALEALGPEPGGEISVTLHYRHGWLHCEVNDDGPGIAPDKIDHIFDKGVSTKGSER 500
Query 241 GLGLAISKEIVSDYGGTIEVESGP 264
G+GLA+ K+ V + GG+I VES P
Sbjct 501 GVGLALVKQQVENLGGSIAVESEP 524
gi|1790346 >gi|1790346 (AE000466) f457; 100 pct identical to
CPXA_ECOLI SW: P08336; CG Site No. 908 [Escherichia coli]
Length = 457
Score = 62.1 bits (148), Expect = 6e-11
Identities = 38/117 (32%), Positives = 59/117 (49%), Gaps = 10/117 (8%)
Query 156 AIRLDLPPDGLQALGNRIRLEQVLINLLQNALEAIGDSEDGAIQVRCEEAAGGIALTVAD 215
++ ++ PP GN LE L N+++NAL I+V GI +TV D
Sbjct 331 SLTVNFPPGPWPLYGNPNALESALENIVRNALRY----SHTKIEVGFAVDKDGITITVDD 386
Query 216 NGPGIAADVREELFTPFNTSKE------DGLGLGLAISKEIVSDYGGTIEVESGPSG 266
+GPG++ + RE++F PF + E G GLGLAI + + + G ++ E P G
Sbjct 387 DGPGVSPEDREQIFRPFYRTDEARDRESGGTGLGLAIVETAIQQHRGWVKAEDSPLG 443
gi|1787894 >gi|1787894 (AE000256) unknown sensor protein in
terminator region [Escherichia coli]
Length = 433
Score = 61.7 bits (147), Expect = 7e-11
Identities = 62/217 (28%), Positives = 95/217 (43%), Gaps = 30/217 (13%)
Query 63 QVAAGVAHEINQPVATIRAYADNARTFLHRGQTVTAAENMESIAELTERVGAITDELRRF 122
Q+ G+AHE+ P+ +R L ++AAE+ ++++ + A+ +EL +
Sbjct 214 QLIDGIAHELRTPLVRLRYR-------LEMSDNLSAAESQALNRDISQ-LEALIEELLTY 265
Query 123 ARKGHFAAGPTAMKEVVEGALMLLRSRFAGRMDAIRLD-------LPPDGLQALGNRIRL 175
AR P + E L L S + A+ D L AL R+ +
Sbjct 266 ARLDR----PQNELHLSEPDLPLWLSTHLADIQAVTPDKTVRIKTLVQGHYAALDMRL-M 320
Query 176 EQVLINLLQNALEAIGDSEDGAIQVRCEEAAGGIALTVADNGPGIAADVREELFTPF--- 232
E+VL NLL NAL + + ++ + A L V D+GPGIA + RE +F PF
Sbjct 321 ERVLDNLLNNALRYCHSTVETSLLLSGNRAT----LIVEDDGPGIAPENREHIFEPFVRL 376
Query 233 ---NTSKEDGLGLGLAISKEIVSDYGGTIEVESGPSG 266
G GLGLAI I GGT+ ++ G
Sbjct 377 DPSRDRSTGGCGLGLAIVHSIALAMGGTVNCDTSELG 413
gi|1788548 >gi|1788548 (AE000311) sensor protein RcsC
[Escherichia coli]
Length = 933
Score = 61.7 bits (147), Expect = 7e-11
Identities = 71/254 (27%), Positives = 116/254 (44%), Gaps = 24/254 (9%)
Query 34 EIADHRQTTEKLQAVQQDLVQANRLAILGQVAAGVAHEINQPVATIRAYADNARTF-LHR 92
+++ + E LQ + Q QA++ + A V+HE+ P+ I D +T L +
Sbjct 429 DVSSRVKMEESLQEMAQAAEQASQSKSM--FLATVSHELRTPLYGIIGNLDLLQTKELPK 486
Query 93 G--QTVTAAENMESIAELTERVGAITD----ELRRFARKGHFAAGPTAMKEVVEGALMLL 146
G + VTA N S+ L + + I D E + + + M + L L+
Sbjct 487 GVDRLVTAMNNSSSL--LLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLV 544
Query 147 RSRFAGRMDAIRLDLPPDGLQALGNRIRLEQVLINLLQNALEAIGDSEDGAIQVRCEEAA 206
+ G I D+P + G+ +RL+QV+ NLL NA++ ++ G I +
Sbjct 545 VRKQLGLYCFIEPDVP---VALNGDPMRLQQVISNLLSNAIKF---TDTGCIVLHVRADG 598
Query 207 GGIALTVADNGPGIAADVREELFTPF---NTSKE---DGLGLGLAISKEIVSDYGGTIEV 260
+++ V D G GI A LF PF T + G GLGLAI ++++S G I V
Sbjct 599 DYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISV 658
Query 261 ESGPS-GTTFAVNL 273
+S P G+ F V +
Sbjct 659 DSEPGMGSQFTVRI 672
gi|1786783 >gi|1786783 (AE000162) f480; This 480 aa ORF is 33 pct
identical (22 gaps) to 441 residues of an approx. 488 aa protein
COPS_PSESM SW: Q02541 [Escherichia coli]
Length = 480
Score = 61.7 bits (147), Expect = 7e-11
Identities = 63/227 (27%), Positives = 90/227 (38%), Gaps = 32/227 (14%)
Query 65 AAGVAHEINQPVATIRAYADNARTFLHRGQTVTAAENMESIAELTERVGAITDELRRFAR 124
+A +AHEI P+ + QT A S EL + + + +EL R A+
Sbjct 266 SADIAHEIRTPITNLIT------------QTEIALSQSRSQKELEDVLYSNLEELTRMAK 313
Query 125 KGH---FAAGPTAMKEVVEGALMLLRSRFAGRMD---------AIRLDLPPDGLQALGNR 172
F A + + E ++ L D + L D Q G+
Sbjct 314 MVSDMLFLAQADNNQLIPEKKMLNLADEVGKVFDFFEALAEDRGVELRFVGDKCQVAGDP 373
Query 173 IRLEQVLINLLQNALEAIGDSEDGAIQVRCEEAAGGIALTVADNGPGIAADVREELFT-- 230
+ L + L NLL NAL E I VRC+ + + V + G IA + LF
Sbjct 374 LMLRRALSNLLSNALRYTPTGE--TIVVRCQTVDHLVQVIVENPGTPIAPEHLPRLFDRF 431
Query 231 ----PFNTSKEDGLGLGLAISKEIVSDYGGTIEVESGPSGTTFAVNL 273
P K +G G+GLAI K IV + GT+ V S GT F + L
Sbjct 432 YRVDPSRQRKGEGSGIGLAIVKSIVVAHKGTVAVTSDARGTRFVITL 478
gi|1786600 >gi|1786600 (AE000146) phosphate regulon sensor
protein PhoR [Escherichia coli]
Length = 431
Score = 60.9 bits (145), Expect = 1e-10
Identities = 62/244 (25%), Positives = 105/244 (42%), Gaps = 22/244 (9%)
Query 41 TTEKLQAVQQDLVQANRL-AILGQVAAGVAHEINQPVATIRAYADNARTFLHRGQTVTAA 99
T ++L V +D+ Q ++L A V+HE+ P+ ++ Y + G A
Sbjct 183 THKQLLMVARDVTQMHQLEGARRNFFANVSHELRTPLTVLQGYLEMMNEQPLEGAVREKA 242
Query 100 ENMESIAELTERVGAITDELRRFARKGHFAAGPTAMKEVVEGALMLLR------SRFAGR 153
+ ++ E T+R+ + +L ++ A PT + M+LR + +
Sbjct 243 --LHTMREQTQRMEGLVKQLLTLSK---IEAAPTHLLNEKVDVPMMLRVVEREAQTLSQK 297
Query 154 MDAIRLDLPPDGLQALGNRIRLEQVLINLLQNALEAIGDSEDGAIQVRCEEAAGGIALTV 213
++ +GL+ GN +L + NL+ NA+ E I VR + G +V
Sbjct 298 KQTFTFEID-NGLKVSGNEDQLRSAISNLVYNAVNHT--PEGTHITVRWQRVPHGAEFSV 354
Query 214 ADNGPGIAADVREELFTPF------NTSKEDGLGLGLAISKEIVSDYGGTIEVESG-PSG 266
DNGPGIA + L F + + G GLGLAI K V+ + + +ES G
Sbjct 355 EDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLNIESTVGKG 414
Query 267 TTFA 270
T F+
Sbjct 415 TRFS 418
gi|1788713 >gi|1788713 (AE000325) putative sensor protein evgs
precursor [Escherichia coli]
Length = 1197
Score = 59.7 bits (142), Expect = 3e-10
Identities = 60/261 (22%), Positives = 122/261 (45%), Gaps = 37/261 (14%)
Query 37 DHRQTTEKLQAVQQDLVQANRLAIL-GQVAAGVAHEINQPVATIRAYADNARTFLHRGQT 95
D +T + + A++ + +A + + Q A ++HEI P+++I + + L G
Sbjct 687 DITETRDLINALEVEKNKAIKATVAKSQFLATMSHEIRTPISSIMGFLE-----LLSGSG 741
Query 96 VTAAENMESIA-------ELTERVGAITD----ELRRFARKGHFAAGPTAMKEVVE--GA 142
++ + +E+I+ L +G I D E + + + PT ++ GA
Sbjct 742 LSKEQRVEAISLAYATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGA 801
Query 143 LMLLRSRFAGRMDAIRLDLPPDGLQALGNRIRLEQVLINLLQNALEAIGDSEDGAIQV-- 200
+ +S P+ + +QVL NLL NAL+ + +GA+++
Sbjct 802 IAASKSIALSCSSTF-----PEHYLVKIDPQAFKQVLSNLLSNALKF---TTEGAVKITT 853
Query 201 ---RCEEAAGGIALTVADNGPGIAADVREELFTPFNTS----KEDGLGLGLAISKEIVSD 253
++ I +T+ D+G G++ + +++LF ++ + ++ G GLGL I KE++ +
Sbjct 854 SLGHIDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKN 913
Query 254 YGGTIEVESGPS-GTTFAVNL 273
G + +ES P GTTF + +
Sbjct 914 MQGDLSLESHPGIGTTFTITI 934
gi|1789808 >gi|1789808 (AE000416) osmolarity sensor protein envz
[Escherichia coli]
Length = 450
Score = 57.4 bits (136), Expect = 1e-09
Identities = 53/205 (25%), Positives = 89/205 (42%), Gaps = 19/205 (9%)
Query 66 AGVAHEINQPVATIRAYADNARTFLHRGQTVTAAENMESIAELTERVGAITDELRRFARK 125
AGV+H++ P+ IR A + A ESI + E AI ++ + R
Sbjct 239 AGVSHDLRTPLTRIRL----ATEMMSEQDGYLA----ESINKDIEECNAIIEQFIDYLRT 290
Query 126 GHFAAGPTAMKEVVEGALMLLRSRFAGRMDAIRLDLPPDGLQALGNRIRLEQVLINLLQN 185
G A V G ++ S + ++ L P ++ + + +++ + N++ N
Sbjct 291 GQEMPMEMADLNAVLGEVIAAESGYEREIETA---LYPGSIEVKMHPLSIKRAVANMVVN 347
Query 186 ALEAIGDSEDGAIQVRCEEAAGGIALTVADNGPGIAADVREELFTPF----NTSKEDGLG 241
A +G I+V V D+GPGIA + R+ LF PF + G G
Sbjct 348 AARY----GNGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSARTISGTG 403
Query 242 LGLAISKEIVSDYGGTIEVESGPSG 266
LGLAI + IV ++ G +E+ + G
Sbjct 404 LGLAIVQRIVDNHNGMLELGTSERG 428
gi|1790551 >gi|1790551 (AE000483) sensor protein BasS/PmrB
[Escherichia coli]
Length = 363
Score = 52.7 bits (124), Expect = 4e-08
Identities = 71/279 (25%), Positives = 117/279 (41%), Gaps = 31/279 (11%)
Query 17 VEERTRDLRMARDRLETEIADH------RQTTEKLQAVQQ---DLVQANRLAILGQ--VA 65
V TR L + LE AD+ T +++AV DLV + +
Sbjct 88 VRRITRPLAELQKELEARTADNLTPIAIHSATLEIEAVVSALNDLVSRLTSTLDNERLFT 147
Query 66 AGVAHEINQPVATIRAYADNARTFLHRGQTVTAAENMESIAELTERVGAITDELRRFARK 125
A VAHE+ P+A +R + + L + + A + + ++ E V +L + AR
Sbjct 148 ADVAHELRTPLAGVRLHLE----LLAKTHHIDVAPLVARLDQMMESVS----QLLQLARA 199
Query 126 GH-FAAGPTAMKEVVEGALML----LRSRFAGRMDAIRLDLPPDGLQALGNRIRLEQVLI 180
G F++G +++E ++ L + R + L + G+ L +L
Sbjct 200 GQSFSSGNYQHVKLLEDVILPSYDELSTMLDQRQQTLLLPESAADITVQGDATLLRMLLR 259
Query 181 NLLQNALEAIGDSEDGAIQVRCEEAAGGIALTVADNGPGIAADVREELFTPF--NTSKED 238
NL++NA + I ++ +E G + + V D GPGI EL F S+
Sbjct 260 NLVENAHRY--SPQGSNIMIKLQEDDGAV-MAVEDEGPGIDESKCGELSKAFVRMDSRYG 316
Query 239 GLGLGLAISKEIVSDYGGT--IEVESGPSGTTFAVNLKK 275
G+GLGL+I I + G ++ SGT V LKK
Sbjct 317 GIGLGLSIVSRITQLHHGQFFLQNRQETSGTRAWVRLKK 355
gi|1790861 >gi|1790861 (AE000510) sensor protein CreC
[Escherichia coli]
Length = 474
Score = 50.0 bits (117), Expect = 2e-07
Identities = 57/233 (24%), Positives = 89/233 (37%), Gaps = 16/233 (6%)
Query 46 QAVQQDLVQANRLAILGQVAAGVAHEINQPVATIRAYADNARTFLHRGQTVTAAENMESI 105
QA++ V+ + Q + HE+ P+A IR A+ R A ++I
Sbjct 241 QALESMRVKLEGKNYIEQYVYALTHELKSPLAAIRGAAEILR---EGPPPEVVARFTDNI 297
Query 106 AELTERVGAITDELRRFARKGHFAAGPTAMKEVVEGALMLLRSRFAGRMDA----IRLDL 161
R+ A+ + L R AR + + V+ A + R A + I L +
Sbjct 298 LTQNARMQALVETLLRQARLEN---RQEVVLTAVDVAALFRRVSEARTVQLAEKKITLHV 354
Query 162 PPDGLQALGNRIRLEQVLINLLQNALEAIGDSEDGAIQVRCEEAAGGIALTVADNGPGIA 221
P + LEQ L NLL NA++ E G I + E + L V D G GI
Sbjct 355 TPTEVNVAAEPALLEQALGNLLDNAIDF--TPESGCITLSAEVDQEHVTLKVLDTGSGIP 412
Query 222 ADVREELFTPF----NTSKEDGLGLGLAISKEIVSDYGGTIEVESGPSGTTFA 270
+F F + + GLGLA E+ + G + + + G A
Sbjct 413 DYALSRIFERFYSLPRANGQKSSGLGLAFVSEVARLFNGEVTLRNVQEGGVLA 465
gi|1789603 >gi|1789603 (AE000400) aerobic respiration control
sensor protein arcb [Escherichia coli]
Length = 776
Score = 48.8 bits (114), Expect = 5e-07
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 10/114 (8%)
Query 167 QALGNRIRLEQVLINLLQNALEAIGDSEDGAIQVRCEEAAGGIA-LTVADNGPGIAADVR 225
Q + + RL Q+L NL+ NA++ ++ G + VR G + V D+G GI D
Sbjct 391 QVITDGTRLRQILWNLISNAVKF---TQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDEL 447
Query 226 EELFTPFNTSKED-----GLGLGLAISKEIVSDYGGTIEVESGP-SGTTFAVNL 273
+++F + K+ G+GLA+S+ + + GG I V S G+TF + +
Sbjct 448 DKIFAMYYQVKDSHGGKPATGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 501
gi|1787374 >gi|1787374 (AE000213) sensor protein PhoQ
[Escherichia coli]
Length = 486
Score = 46.9 bits (109), Expect = 2e-06
Identities = 43/199 (21%), Positives = 89/199 (44%), Gaps = 21/199 (10%)
Query 68 VAHEINQPVATIRAYADNARTFLHRGQTVTAAENMESIAELTERVGAITDELRRFARKGH 127
+ H + P+A +++ R+ +V+ AE + + E++ I+ ++ + +
Sbjct 275 LTHSLKTPLAVLQS---TLRSLRSEKMSVSDAEPV-----MLEQISRISQQIGYYLHRAS 326
Query 128 FAAGPTAMKEVVEGALML------LRSRFAGRMDAIRLDLPPDGLQALGNRIRLEQVLIN 181
G +E+ A +L L + + I LD+ P+ + +G + +V+ N
Sbjct 327 MRGGTLLSRELHPVAPLLDNLTSALNKVYQRKGVNISLDISPE-ISFVGEQNDFVEVMGN 385
Query 182 LLQNALEAIGDSEDGAIQVRCEEAAGGIALTVADNGPGIAADVREELFTPFNT--SKEDG 239
+L NA + + +++ + + + V D+GPGI RE +F + G
Sbjct 386 VLDNACKYCLEF----VEISARQTDEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTLRPG 441
Query 240 LGLGLAISKEIVSDYGGTI 258
G+GLA+++EI Y G I
Sbjct 442 QGVGLAVAREITEQYEGKI 460
gi|1789403 >gi|1789403 (AE000384) o449; This 449 aa ORF is 44 pct
identical (3 gaps) to 435 residues of an approx. 456 aa protein
YGIY_HAEIN SW: P45336 [Escherichia coli]
Length = 449
Score = 37.9 bits (86), Expect = 0.001
Identities = 42/206 (20%), Positives = 83/206 (39%), Gaps = 17/206 (8%)
Query 69 AHEINQPVATIRAYADNARTFLHRGQTVTAAENMESIAELTERVGAITDELRRFARKGHF 128
AHE+ P+ ++ + A+ L + + + +R + D+L +R
Sbjct 245 AHELRSPLTALKVQTEVAQ--LSDDDPQARKKALLQLHSGIDRATRLVDQLLTLSRLDSL 302
Query 129 A----AGPTAMKEVVEGALMLLRSRFAGRMDAIRLDLPPDGLQALGNRIRLEQVLINLLQ 184
++++++ ++M + +RL L ++ G + L ++ NLL
Sbjct 303 DNLQDVAEIPLEDLLQSSVMDIYHTAQQAKIDVRLTLNAHSIKRTGQPLLLSLLVRNLLD 362
Query 185 NALEAIGDSEDGAIQVRCEEAAGGIALTVADNGPGIA----ADVREELFTPFNTSKEDGL 240
NA+ S G++ + V DNGPG+ A + E + P + G
Sbjct 363 NAVRY---SPQGSV---VDVTLNADNFIVRDNGPGVTPEALARIGERFYRPPGQT-ATGS 415
Query 241 GLGLAISKEIVSDYGGTIEVESGPSG 266
GLGL+I + I +G +E + G
Sbjct 416 GLGLSIVQRIAKLHGMNVEFGNAEQG 441
gi|1788279 >gi|1788279 (AE000288) f452; This 452 aa ORF is 26 pct
identical (16 gaps) to 438 residues of an approx. 488 aa protein
COPS_PSESM SW: Q02541 [Escherichia coli]
Length = 452
Score = 37.1 bits (84), Expect = 0.002
Identities = 51/208 (24%), Positives = 85/208 (40%), Gaps = 22/208 (10%)
Query 61 LGQVAAGVAHEINQPVATIRAYADNARTFLHRGQTVTAAENMESIA---ELTERVGAITD 117
L Q A +AHE+ P+ + N T QT + AE ++IA E E + +T+
Sbjct 236 LSQFADDLAHELRTPINAL--LGQNQVTL---SQTRSIAEYQKTIAGNIEELENISRLTE 290
Query 118 ELRRFARKGH----FAAGPTAMKEVVEGALMLLRSRFAGRMDAIRLDLPPDGLQALGNRI 173
+ AR ++ + VE L L + +++ Q ++I
Sbjct 291 NILFLARADKNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFKVEC---NQQIFADKI 347
Query 174 RLEQVLINLLQNALEAIGDSEDGAIQVRCEEAAGGIALTVADNGPGIAADVREELFTPF- 232
L+++L NL+ NA+ E I + L + PG + E+LF F
Sbjct 348 LLQRMLSNLIVNAIRY--SPEKSRIHITSFLDTNSY-LNIDIASPGTKINEPEKLFRRFW 404
Query 233 ---NTSKEDGLGLGLAISKEIVSDYGGT 257
N+ G GLGL++ K I +GG+
Sbjct 405 RGDNSRHSVGQGLGLSLVKAIAELHGGS 432
gi|1788908 >gi|1788908 (AE000342) f496; f496 (ttg start);
ORF_f460 GB: U36841 uses atg start at 2685714; This 496 aa ORF is 30
pct identical (14 gaps) to 292 residues of an approx. 480 aa protein
CREC_ECOLI SW: P08401 [Escherichia coli]
Length = 496
Score = 34.4 bits (77), Expect = 0.012
Identities = 43/205 (20%), Positives = 82/205 (39%), Gaps = 11/205 (5%)
Query 68 VAHEINQPVATIRAYADNARTFLHRGQTVTAAENMESIAELTERVGAITDELRRFARKGH 127
++HE+ P+A++R + + T E + + + + + ++L + RK
Sbjct 278 LSHELKTPLASMREGTELLADQVVGPLTPEQKEVVSILDSSSRNLQKLIEQLLDYNRKQA 337
Query 128 FAAGPTAMKEVVEGALMLLRSR-FAGRMDAIRLDLPPDGLQALGNRIRLEQVLINLLQNA 186
+A E+ ++ + R + D+ L + L VL NL NA
Sbjct 338 DSAVELENVELAPLVETVVSAHSLPARAKMMHTDVDLKATACLAEPMLLMSVLDNLYSNA 397
Query 187 LEAIGDSEDGAIQVRCEEAAGGIALTVADNGPGIAADVREELFTPFNTSKED------GL 240
+ +E G I +R + + V + G I + R +F PF G
Sbjct 398 VHY--GAESGNICLRSSLHGARVYIDVINTGTPIPQEERAMIFEPFFQGSHQRKGAVKGS 455
Query 241 GLGLAISKEIVSDYGGTIEV--ESG 263
GLGL+I+++ + G + + ESG
Sbjct 456 GLGLSIARDCIRRMQGELYLVDESG 480
gi|1788197 >gi|1788197 (AE000282) chemotaxis protein CheA
[Escherichia coli]
Length = 654
Score = 33.2 bits (74), Expect = 0.026
Identities = 32/137 (23%), Positives = 59/137 (42%), Gaps = 37/137 (27%)
Query 174 RLEQVLINLLQNALE----------AIGDSEDGAIQVRCEEAAGGIALTVADNGPGIAAD 223
R+ L +L++N+L+ A G + G + + E G I + V D+G G+ +
Sbjct 369 RIIDPLTHLVRNSLDHGIELPEKRLAAGKNSVGNLILSAEHQGGNICIEVTDDGAGLNRE 428
Query 224 ---------------------VREELFTP-FNTSKE----DGLGLGLAISKEIVSDYGGT 257
V +F P F+T+++ G G+G+ + K + GG
Sbjct 429 RILAKAASQGLTVSENMSDDEVAMLIFAPGFSTAEQVTDVSGRGVGMDVVKRNIQKMGGH 488
Query 258 IEVESGP-SGTTFAVNL 273
+E++S +GTT + L
Sbjct 489 VEIQSKQGTGTTIRILL 505
gi|1787154 >gi|1787154 (AE000194) o1486; This 1486 aa ORF is 97
pct identical (3 gaps) to 1390 residues of a 1534 aa protein MUKB_ECOLI
SW: P22523 [Escherichia coli]
Length = 1486
Score = 29.0 bits (63), Expect = 0.51
Identities = 27/94 (28%), Positives = 41/94 (42%), Gaps = 3/94 (3%)
Query 27 ARDRLETEIADHRQTTEKLQAVQQDLVQANRLAILGQVAAGVAHEINQPVATIRAYADNA 86
A + LET A + TEK+ +++Q + A + A + IN P+A A+ D A
Sbjct 440 AAEWLETFQAKELEATEKMLSLEQKMSMAQTAHSQFEQAYQLVVAINGPLARNEAW-DVA 498
Query 87 RTFLHRGQTVTAAENMESIAELTERVGAITDELR 120
R L G V E + L R+ + LR
Sbjct 499 RELLREG--VDQRHLAEQVQPLRMRLSELEQRLR 530
gi|1789251 >gi|1789251 (AE000372) o276; This 276 aa ORF is 81 pct
identical (0 gaps) to 276 residues of an approx. 456 aa protein
YJCD_ECOLI SW: P32702 [Escherichia coli]
Length = 276
Score = 28.6 bits (62), Expect = 0.67
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
Query 51 DLVQANRLAILGQVAAGVAHEINQPVATIRAYADNARTFLHRGQTVTAAENM--ESIAEL 108
D++ A + +L V A V + TIRA A A Q + + + +S++ +
Sbjct 75 DIMGALQPTVLPSVLALVMTAVFDATGTIRAVAGQANLLDKDNQIINGGKALTSDSVSSI 134
Query 109 -TERVGAITDELRRFARKGHFAAGPTAMKEVVEGALMLL 146
+ VGA + + G A G T + V GAL LL
Sbjct 135 FSGLVGAAPAAVYIESAAGTAAGGKTGLTATVVGALFLL 173
gi|1787474 >gi|1787474 (AE000220) nitrate/nitrite sensor protein
NarX [Escherichia coli]
Length = 598
Score = 26.6 bits (57), Expect = 2.6
Identities = 34/163 (20%), Positives = 64/163 (38%), Gaps = 9/163 (5%)
Query 60 ILGQVAAGVAHEINQPVATIRAYADNARTFLHRGQTVTAAENMESIAELTERVGAITDEL 119
I+ + A +A E++ +A + + L + E ++++ + A +L
Sbjct 386 IVMEERATIARELHDSIAQSLSCMKMQVSCLQMQGDALPESSRELLSQIRNELNASWAQL 445
Query 120 RRFARKGHFAAGPTAMKEVVEGALMLLRSRFAGRMDAIRLD--LPPDGLQALGNRIRLEQ 177
R ++ +E + ++F ++LD LPP L I L Q
Sbjct 446 RELLTTFRLQLTEPGLRPALEASCEEYSAKFGF---PVKLDYQLPPR-LVPSHQAIHLLQ 501
Query 178 VLINLLQNALEAIGDSEDGAIQVRCEEAAGGIALTVADNGPGI 220
+ L NAL+ S+ + V + + LTV DNG G+
Sbjct 502 IAREALSNALK---HSQASEVVVTVAQNDNQVKLTVQDNGCGV 541
gi|1789238 >gi|1789238 (AE000370) o310; This 310 aa ORF is 45 pct
identical (21 gaps) to 307 residues of an approx. 312 aa protein
ARCC_HAEIN SW: P44769 [Escherichia coli]
Length = 310
Score = 26.2 bits (56), Expect = 3.4
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query 118 ELRRFARKGHFAAGPTAMKEVVEGALMLLRSRFAGR 153
+ RF +GHFA G +M VE A RSR AGR
Sbjct 254 DAERFIEEGHFAKG--SMLPKVEAAASFARSR-AGR 286
gi|1786643 >gi|1786643 (AE000150) Lon protease [Escherichia coli]
Length = 784
Score = 25.8 bits (55), Expect = 4.4
Identities = 15/61 (24%), Positives = 29/61 (46%), Gaps = 1/61 (1%)
Query 111 RVGAITDELRRFARKGHFAAGPTAMKEVVEGALMLLRSRFAGRMDAIRLDLPPDGLQALG 170
R+ A++D F+ K + PT + E + S+F G + + +PP+ L +L
Sbjct 99 RISALSDNGEHFSAKAEYLESPTIDEREQEVLVRTAISQFEGYI-KLNKKIPPEVLTSLN 157
Query 171 N 171
+
Sbjct 158 S 158
gi|1786679 >gi|1786679 (AE000153) heat shock protein HtpG
[Escherichia coli]
Length = 624
Score = 25.8 bits (55), Expect = 4.4
Identities = 18/68 (26%), Positives = 30/68 (43%), Gaps = 10/68 (14%)
Query 195 DGAIQVRCEEAAGGIALTVADNGPGIAADVREELFTPFNTSKEDG-------LGLGLAIS 247
DG ++VR LT++DNG G+ R+E+ T + G LG A
Sbjct 60 DGELRVRVSFDKDKRTLTISDNGVGM---TRDEVIDHLGTIAKSGTKSFLESLGSDQAKD 116
Query 248 KEIVSDYG 255
+++ +G
Sbjct 117 SQLIGQFG 124
gi|1787334 >gi|1787334 (AE000210) malonyl CoA-acyl carrier
protein transacylase [Escherichia coli]
Length = 309
Score = 24.7 bits (52), Expect = 9.9
Identities = 15/35 (42%), Positives = 19/35 (53%), Gaps = 1/35 (2%)
Query 186 ALEAIGDSEDGAIQVRCEEAA-GGIALTVADNGPG 219
A+ AI +D +I CEEAA G + V N PG
Sbjct 131 AMAAIIGLDDASIAKACEEAAEGQVVSPVNFNSPG 165
gi|1788812 >gi|1788812 (AE000333) nitrate/nitrite sensor protein
narQ [Escherichia coli]
Length = 566
Score = 24.7 bits (52), Expect = 9.9
Identities = 11/16 (68%), Positives = 13/16 (80%)
Query 17 VEERTRDLRMARDRLE 32
VEE+TRDL A+ RLE
Sbjct 233 VEEKTRDLHEAKRRLE 248
CPU time: 0.61 user secs. 0.04 sys. secs 0.65 total secs.
Database: E. coli genomic CDS translations
Posted date: Sep 12, 1997 11:54 PM
Number of letters in database: 1,351,301
Number of sequences in database: 4257
Lambda K H
0.319 0.135 0.369
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 614948
Number of Sequences: 4257
Number of extensions: 24483
Number of successful extensions: 146
Number of sequences better than 10: 31
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 89
Number of HSP's gapped (non-prelim): 37
length of query: 277
length of database: 1351301
effective HSP length: 47
effective length of query: 230
effective length of database: 1151222
effective search space: 264781060
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 52 (24.7 bits)
