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projects: nucleosome recognition

projects: HAT complexes

projects: TBP recruitment
projects: histone-fold complexes
projects: polycistronic expression
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gallery: secondary structure
gallery: selected proteins
gallery: protein/DNA complexes

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Gene regulation is fundamental to the proper functioning of a cell, and many cancers can be traced to abnormal gene regulation. Our goal is to understand how genes are regulated by combining genetic, biochemical and structural descriptions. Our expectation is that such information will contribute to the development of future therapeutic agents against cancer and other human diseases.

We are particularly interested in dissecting the molecular mechanisms of transcription on a chromatin template to understand how genes are turned off and on. To do so, we perform biochemical studies of chromatin enzymes and we use X-ray crystallography to determine their three-dimensional structures. The questions that we wish to address include:


  1. how chromatin enzymes and transcription factors recognize nucleosomes and,
  2. how coactivators enhance transcription by recruiting the TBP general transcription factor to the promoter.

The two rate-limiting steps in structure determination of large complexes by X-ray crystallography are generating large quantities of high purity material and crystallizing the complexes. We have developed methods for reconstituting recombinant multicomponent complexes and we continue research to improve those methods. We are also investigating novel methods and tools for crystallizing multicomponent complexes.
Nov 2009: We've moved to our new research space in the Center for Eukaryotic Gene Regulation on the 4th floor of North Frear Lab. You can check out pictures of the Opening Reception and the Center's research space.
The Penn State 26th Summer Symposium in Molecular Biology on the topic of Chromatin and Epigenetic Regulation of Transcription was held on June 19-22, 2007. The next Penn State Chromatin Summer Symposium will be held in 2011.
  National Institutes of Health logo Pew Scholars Program logo
Our research is supported by the National Institutes of Health.
We gratefully acknowledge past support from the Pew Scholars Program in the Biomedical Sciences.
   
   
Members of our Lab: Contact Info:
  PI Song Tan 468A North Frear Laboratory
  Postdoctoral Fellows Melanie Adams-Cioaba University Park, PA 16802
    Sung-Hoon Jun (814) 865-3355 (office)
    Ravindra Makde (814) 865-3354 (lab)
  Research Associates Gurangad Chandok  
    Allen Minns  
    Bryan Thurston  
  Grad Students Jiehuan Huang  
    Matt Jennings  
    Tom Koerber  
    Manoj Saxena  
  Undergraduates Kieran Aurori Josh McAnulty
    Andrew Fleischman Abhinav Nair
    Ben Himes Aaron Nogan
    Zach Hostetler Wil Santivasi
       

Selected Publications:

  • Psathas, J.N., S. Zheng, S. Tan and J. Reese (2009) Set2-dependent K36 methylation is regulated by novel intratail interactions within H3, Mol. Cell. Biol., 29:6413-6426. (abstract)

  • S. Tan and J. Reese (editors) (2009) BBA - Gene Regulatory Mechanisms Special Issue on Epigenetics, 1789:1-68.

  • Selleck, W. and S. Tan (2008) Recombinant protein complex expression in E. coli, Curr Protocols Protein Sci, Chapter 5, unit 5.21. (abstract)

  • Altaf, M., R.T. Utley, N. Lacoste, S. Tan, S.D. Briggs, J. Cote (2007) Interplay of chromatin modifiers on a short basic patch of histone H4 tail defines the boundary of telomeric heterochromatin, Mol. Cell, 28:1002-1014. (abstract)

  • Barrios, A., Selleck, W., Hnatkovich. B., Kramer, R., Sermwittayawong, D. and S. Tan (2007) Expression and purification of recombinant yeast Ada2/Ada3/Gcn5 and Piccolo NuA4 histone acetyltransferase complexes, Methods, 41:271-277. (abstract)

  • Berndsen, C.E., Selleck, W., McBryant, S.J., Hansen, J.C. , S. Tan and J.M. Denu (2007) Nucleosome recognition by the Piccolo NuA4 histone acetyltransferase complex, Biochemistry, 46:2091-2099. (abstract)

  • Berndsen, C.E., Albaugh, B.N., Tan, S. and J.M. Denu (2007) Catalytic mechanism of a MYST family histone acetyltransferase, Biochemistry, 46:623-629, Accelerated Publication. (abstract)

  • Sermwittayawong, D. and Tan, S. (2006) SAGA binds TBP via its Spt8 subunit in competition with DNA, implications for TBP recruitment, EMBO Journal, 25:3791-3800. (abstract)
  • Doyon Y., Cayrou, C., Ullah, M., Landry, A.J., Cote, V., Selleck, W., Lane, W.S., Tan, S. , Yang, X.J. and Cote, J. (2006) ING Tumor Suppressor Proteins Are Critical Regulators of Chromatin Acetylation Required for Genome Expression and Perpetuation, Mol. Cell, 21:51-64. (abstract)

  • Selleck, W., Fortin, I., Sermwittayawong, D., Cote, J. and Tan, S. (2005) The yeast Piccolo NuA4 HAT complex requires the Enhancer of Polycomb A and chromo domains to acetylate nucleosomes, Mol. Cell. Biol., 25:5535-5542. (abstract)

  • Lichty, J.L., Malecki, J.L., Agnew, H.D., Michelson-Horowitz, D.J. and Tan, S. (2005) Comparison of Affinity Tags for Protein Purification, Prot. Expr. Purif., 41:98-105. (abstract)
  • Tan, S., Kern, R.C. and Selleck, W. (2005) The pST44 polycistronic expression system for producing protein complexes in Escherichia coli, Prot. Expr. Purif., 40:385-395. (abstract)

  • Doyon, Y., Selleck, W., Lane, W.S., Tan, S. and Côté, J. (2004) Structural and functional conservation of the NuA4 histone acetyltransferase complex from yeast to human, Mol. Cell. Biol., 24:1884-1896. (abstract)

  • Boudreault, A.A. , Cronier, D., Selleck, W., Lacoste, N., Utley, R.T., Allard, S., Savard, J., Lane, W.S., Tan, S. and Côté, J. (2003) Yeast Enhancer of polycomb defines global Esa1-dependent acetylation of chromatin, Genes & Dev, 17:1415-1428. (abstract)

  • Bleichenbacher, M.M., Tan, S. and Richmond, T.J. (2003) Novel Interactions Between the Components of Human and Yeast TFIIA/TBP/DNA Complexes, J. Mol Biol., 332:783-793. (abstract)

  • Boyer, L.A., Langer, M.R., Crowley, K.A., Tan, S., Denu, J.M., and Peterson, C.L. (2002) Essential role for the SANT domain in the functioning of multiple chromatin remodeling enzymes. Mol. Cell, 10:935-942. (abstract)

  • Balasubramanian, R., Pray-Grant, M.G., Selleck, W., Grant, P.A. and Tan, S. (2002) Role of the Ada2 and Ada3 transcriptional coactivators in histone acetylation, J. Biol. Chem., 277: 7989-7995. (abstract)

  • Selleck, W., Howley, R., Fang, J., Podolny, V., Fried, M.G., Buratowski, S. and Tan, S. (2001) A histone fold TAF octamer within the yeast TFIID transcriptional coactivator, Nature Struct. Biol., 8:695-700. (abstract)
  • Brown, C.E., Howe, L, Sousa, K., Alley, S.C., Carrozza, M.J., Tan, S. and Workman, J.L. (2001) Recruitment of HAT complexes by direct activator interactions with the ATM-related Tra1 subunit, Science, 292: 2333-2337. (abstract)
  • Tan, S. (2001) A Modular Polycistronic Expression System for Overexpressing Protein Complexes in Escherichia Coli, Prot. Expr. Purif., 21: 224-234. (abstract)
  • Gaiser, F., Tan, S. and Richmond, T.J. (2000) Novel Dimerization Fold of RAP30/RAP74 in Human TFIIF at 1.7 Å Resolution , J. Mol Biol., 302: 1119-1127. (abstract)
  • Tan, S., Hunziker, Y., Pellegrini, L. and Richmond, T.J. (2000) Crystallization of the yeast MATalpha2/MCM1/DNA ternary complex: general methods and principles for protein/DNA cocrystallization, J. Mol Biol., 297: 947-959. (reprint)
  • Tan, S. and Richmond, T.J. (1998) Crystal structure of the yeast MATalpha2/MCM1/DNA ternary complex, Nature, 391: 660-666. (abstract)
  • Tan, S., Hunziker, Y., Sargent, D.F. and Richmond, T.J. (1996) Crystal structure of a yeast TFIIA/TBP/DNA complex, Nature, 381: 127-134. (abstract)
  • Pellegrini, L, Tan, S. and Richmond, T.J. (1995) Structure of serum response factor core bound to DNA, Nature, 376: 490-498. (abstract)


projects: | nucleosome recognition | HAT complexes | TBP recruitment | histone-fold complexes | polycistronic expression |
picture & movie gallery:
| amino acids | secondary structure | selected proteins | protein/DNA complexes |
background reading | reprints | positions |
lab pictures |


This page is maintained by Song Tan: sxt30@psu.edu (814-865-3355)
Department of Biochemistry & Molecular Biology, 108 Althouse Lab, University Park, PA 16802

This page was last updated on January 6, 2010.

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