Cyanobacteria
- Synechococcus sp. PCC 7002
(Completed)
- chromosome

- plasmid pAQ1

- plasmid pAQ3

- plasmid pAQ4

- plasmid pAQ5

- plasmid pAQ6

- plasmid pAQ7

- Arthrospira maxima

- Chocolate Pots, Strain JSC-1

Chlorobi: Green Sulfur Bacteria
- Chlorobium chlorochromatii CaD3 (Completed)

- Chlorobium ferrooxidans DSM 13031 (Draft)

- Chlorobium limicola DSM 245 (Completed)

- Chlorobium phaeobacteroides BS1 (Completed)

- Chlorobium phaeobacteroides DSM 266 (Completed)

- Chlorobium tepidum TLS (Completed)

- Pelodictyon luteolum DSM 273 (Completed)

- Pelodictyon phaeoclathratiforme BU-1 (Completed)

- Prosthecochloris aestuarii DSM 271 (Completed)

- Prosthecochloris vibrioformis DSM 265 (Completed)

- Chlorobaculum parvum DSM 263 (Completed)

- Chloroherpeton thalassium ATCC 35110 (Completed)

Chloroflexi
- Roseiflexus sp. RS-1 (Completed)

- Roseiflexus castenholzii (Completed)

- Herpetosiphon aurantiacus (Completed)

- Chloroflexus aggregans (Draft)

- Chloroflexus sp. strain Y-400-fl (Draft)

- Chloroflexus sp. strain Y-396-1

- Candidatus Chlorothrix halophila

Acidobacteria
- Candidatus Chloracidobacterium thermophilum

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