Publications by Stephan C. Schuster

2007

Lange, C., A. Zaigler, M. Hammelmann, J. Twellmeyer, G. Raddatz, S. C. Schuster, D. Oesterhelt, and J. Soppa.  Genome-wide analysis of translational regulation in halophilic archaea.

BMC Genomics 8:415#.

Gilbert, M. T. P., L. P. Tomsho, S. Rendulic, M. Packard, D. I. Drautz, A. Sher, A. Tikhonov, L. Dalén, T. Kuznetsova, P. Kosintsev, P. F. Campos, T. Higham, M. J. Collins, A. S. Wilson, F. Shidlovskiy, B. Buigues, P. G. P. Ericson, M. Germonpré, A. Götherström, P. Iacumin, V. Nikolaev, M. Nowak-Kemp, E. Willerslev, J. R. Knight, G. P. Irzyk, C. S. Perbost, K. M. Fredrikson, T. T. Harkins, S. Sheridan, W. Miller, and S. C. Schuster.  Whole-genome shotgun sequencing of mitochondria from ancient hair shafts.  Science 317:1927-1930.

Linz, B. and S. C. Schuster.  Genomic diversity in Helicobacter and related organisms.  Res. Microbiol. 158:737-744.

H. Saenz, P. Engel, M. C. Stöckli, M. Vayssier-Taussat, R. Birtles, C. Lanz, R. Raddatz, S. C. Schuster, and C. Dehio.  An integrated genomic approach identifies a central role for bacterial type IV secretion systems in host adaptation and virulence adjustment.  Nat. Genet. 39:1469-1476.

Schneiker, S., O. Perlova, A. Alici, M. O. Altmeyer, D. Bartels, T. Bekel, S. Beyer, H. Blöcker, E. Bode, H. B. Bode, C. J. Bolten, J. V. Choudhuri, S. Doss, Y. A. Elnakady, B. Frank, L. Gaigalat, K. Gerth, A. Goesmann, C. Groeger, F. Gross, L. Jelsbak, L. Jelsbak, O. Kaiser, J. Kalinowski, C. Kegler, T. Knauber, S. Konietzny, M. Kopp, L. Krause, D. Krug, B. Linke, T. Mahmud, R. Martinez-Arias, A. C. McHardy, M. Merai, F. Meyer, S. Mormann, J. Muñoz-Dorado, J. Perez, S. Pradella, S. Rachid, G. Raddatz, F. Rosenau, C. Rückert, F. Sasse, M. Scharfe, S. C. Schuster, G. Suen, A. Treuner-Lange, G. J. Velicer, F. J. Vorhölter, K. J. Weissman, R. D. Welch, S. C. Wenzel, D. Whitworth, S. Wilhelm, C. Wittmann, A. Pühler, and R. Müller.  Complete sequence of the myxobacterium Sorangium cellulosum.   Nat. Biotechnol. 25:1281-1289.

Barabote, R. D., S. Rendulic, S. C. Schuster, and M. H. Saier.  Comprehensive analysis of transport proteins encoded within the genome of Bdellovibrio bacteriovorus.  Genomics 90:424 - 446.

Richter, D. C., S. C. Schuster, and D. H. Huson.  OSLay: optimal syntenic layout of unfinished assemblies.  Bioinformatics 23:1573-1579.

Albert, I., T. N. Mavrich, L. Tomsho, J. Qi, S. J. Zanton, S. C. Schuster, and B. F. Pugh.  Fine-structure mapping of chromatin throughout the yeast genome.  Nature  446:572-576.

Huson, D. H., A. Auch, J. Qi, and S. C. Schuster.  MEGAN: A tool for metagenomics. 

Genome Res. 17:377-386.

Gilbert, M. T., J. Binladen, W. Miller, C. Wiuf, E. Willerslev, H. Poinar, J. E. Carlson, J. H. Leebens-Mack, and S. C. Schuster.  Recharacterization of ancient DNA miscoding lesions: insights in the era of sequencing-by-synthesis.  Nucl. Acids Res. 35:1-10.

2006

Gilbert, M.T., J. Binladen, W. Miller, C. Wiuf, E. Willerslev, H. Poinar, J.E. Carlson, J.H. Leebens-Mack, and S.C. Schuster. Recharacterization of ancient DNA miscoding lesions: insights in the era of sequencing-by-synthesis. Nucleic Acids Res. 35:1-10.

Eppinger, M., C. Baar, B. Linz, G. Raddatz, C. Lanz, H. Keller, G. Morelli, H. Gressmann, M. Achtman, and S.C. Schuster. Who ate whom? Adaptive Helicobacter genomic changes that accompanied a host jump from primates to large felines. PLoS Genet. 2:120.

Leininger, S., T. Urich, M. Schloter, L. Schwart, J. Qi, G.W. Nicol, J.I. Prosser, S.C. Schuster, and C. Schleper. Archaea predominate among ammonia-oxidizing prokaryotes in soils. Nature 442:806-809.

Velicer, G.J., G. Raddatz, S. Deiss, C. Lanz, H. Keller, S. Kadam, and S.C. Schuster. Comprehensive mutation identification in an evolved bacterial cooperator and its cheating ancestor. Proc. Natl. Acad. Sci. USA 103:8107-8112.

Lambert, C., K.J. Evans, R. Till, L. Hobley, S. Rendulic, S.C. Schuster, S.I. Aizawa, and R.E. Sockett. Characterising the flagellar filament and the role of motility in bacterial prey-penetration by Bdellovibrio bacteriovorus. Mol. Microbiol. 60:274-286.

Poinar, H.N., C. Schwarz, J. Qi, B. Shapiro, R.D.E. MacPhee, B. Buigues, A. Tikhonov, D.H. Huson, L.P. Tomsho, A. Auch, M. Rampp, W. Miller, and S.C. Schuster. Metagenomics to paleogenomics: Large scale sequencing of Mammoth DNA. Science 311:392-394.

2005

Schuster, S.C. and G. Gottschalk. Microbial genomics in its second decade. Curr. Opin. Microbiol. 8:561-563.
 
Thieme, F., R. Koebnik, T. Bekel, C. Berger, J. Boch, D. Büttner, C. Caldana, L. Gaigalat, A.
Goesmann, S. Kay, O. Kirchner, B. Linke, A. McHardy, F. Meyer, G. Mittenhuber, D. Nies, U.
Niesbach-Klösgen, T. Patschkowski, C. Rückert, O. Rupp, S. Schneiker, C. Lanz, S.C. Schuster, E. Vorhölter, A. Pühler, U. Bonas, D. Bartels, and O. Kaiser. Novel insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence. J. Bacteriol. 187:7254-7266.
 
Schuster, S.C. and S. Rendulic. Mikrobielle Jäger und Parasiten - Wie räuberische Bakterien Bakterien fressen. Naturw. Rdsch. 58:469-474.
 
Treusch, A.H., S. Leininger, A. Kletzin, S.C. Schuster, H.-P. Klenk, and C. Schleper. Role of mesophilic crenarchaeota in nitrogen cycling. Environ. Microbiol. 7:1985-1995.
 
Bartels, D., S. Kespohl, S. Albaum, T. Drüke, A. Goesmann, O. Kaiser, A. Pühler, F. Pfeiffer, G.
Raddatz, J. Stoye, F. Meyer, and S.C. Schuster. BACCardI – A tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison. Bioinformatics 21:853-859.
 
Henz, S.R., A.F. Auch, D.H. Huson, K. Nieselt-Struwe, and S.C. Schuster. Whole genome-based prokaryotic phylogeny. Bioinformatics 21:2329-2335.