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2003 Faculty Publications

Ades, S.E., I.L. Grigorova, and C.A. Gross. Regulation of the alternative sigma factor sigma(E) during initiation, adaptation, and shutoff of the extracytoplasmic heat shock response in Escherichia coli. J. Bacteriol. 185:2512-2519.

Weilbacher, T., K. Suzuki, A.K. Dubey, X. Wang, S. Gudapaty, I. Morozov, C.S. Baker, D. Georgellis, P. Babitzke, and T. Romeo. A novel sRNMA component of the carbon storage regulatory system of Escherichia coli. Mol. Microbiol. 48:657-670.

Dubey, A.K., C.S. Baker, K. Suzuki, D. Jones, P. Pandit, T. Romeo, and P. Babitzke. CsrA regulates translation of the Escherichia coli carbon starvation gene, cstA, by blocking ribosome access to the cstA transcript. J. Bacteriol. 185:4450-4460.

Schaak, J.E., H. Yakhnin, P.C. Bevilacqua, and P. Babitzke. A Mg²⁺-dependent RNA tertiary structure forms in the Bacillus subtilis trp operon leader transcript and appears to interfere with trpE translation control by inhibiting TRAP binding. J. Mol. Biol. 332:555-574.

Schaak, J.E., P. Babitzke, and P.C. Bevilacqua. Phylogenetic conservation of RNA secondary and tertiary structure in the trpEDCFBA operon leader transcript in Bacillus. RNA 9:1502-1515.

Babitzke, P., J. Schaak, A.V. Yakhnin, and P.C. Bevilacqua. Role of RNA structure in transcription attenuation in Bacillus subtilis: The trpEDCFBA operon as a model system. Methods Enzymol. 371:392-404.

Baldwin, J., C. Krebs, L. Saleh, M. Stelling, B.H. Huynh, J.M. Bollinger, Jr., and P. Riggs-Gelasco. Structural characterization of the peroxodiiron(III) intermediate generated during oxygen activation by the W48A/D84E variant of ribonucleotide reductase protein R2 from Escherichia coli. Biochemistry 42:13269-13279.

Voegtli, W.C., M. Sommerhalter, L. Saleh, J. Baldwin, J.M. Bollinger, Jr., and A.C. Rosenzweig. Variable coordination geometries at the diiron(II) active site of ribonucleotide reductase R2. J. Am. Chem. Soc. 125:15822-15830.

Price, J.C., E.W. Barr, B. Tirupati, J.M. Bollinger, Jr., and C. Krebs. The first direct characterization of a high-valent iron intermediate in the reaction of an a-ketoglutarate-dependent dioxygenase: A high-dpin Fe(IV) complex in taurine/a-ketoglutarate dioxygenase (TauD) from Escherichia coli. Biochemistry 42:7497-7508.

Mitic, N., L. Saleh, G. Schenk, J.M. Bollinger, Jr., and E.I. Solomon. Rapid-freeze-quench magnetic circular dichroism of intermediate X in ribonucleotide reductase: new structural insight. J. Am. Chem. Soc. 125:11200-11201.

Price, J.C., E.W. Barr, T.E. Glass, C. Krebs, and J.M. Bollinger, Jr. Evidence for hydrogen abstraction from C1 of taurine by the high-spin Fe(IV) intermediate detected during oxygen activation by taurine: a-ketoglutarate dioxygenase (TauD). J. Am. Chem. Soc. 125:13008-13009.

Sheridan, P., K.H. Freeman, and J.E. Brenchley. Estimated minimal divergence times of the major bacterial and archaeal phyla. Geomicrobiol. J. 20:1-14.

Sheridan, P.P., J. Loveland-Curtze, V.I. Miteva, and J.E. Brenchley. Rhodoglobus vestilii gen. nov., sp. nov., a novel psychrophilic organism isolated from an Antarctic Dry Valley lake. Int. J. Syst. Evol. Microbiol. 53:985-994.

Sheridan, P.P., V.I. Miteva, and J.E. Brenchley. Phylogenetic analysis of anaerobic psychrophilic enrichment cultures obtained from a Greenland glacier ice core. Appl. Environ. Microbiol. 69:2153-2160.

Coker, J.A., P.P. Sheridan, J. Loveland-Curtze, K.R. Gutshall, A.J. Auman, and J.E. Brenchley. Biochemical characterization of a b-galactosidase with a low temperature optimum obtained from an Antarctic Arthrobacter isolate. J. Bacteriol. 185:5473-5482.

Frigaard, N.-U., A. Gomez Maqueo Chew, H. Li, J.A. Maresca, and D.A. Bryant. Chlorobium tepidum: insights into the physiology and biochemistry of green sulfur bacteria from the complete genome sequence. Photosynth. Res. 78:93-117.

Yu, J., G. Shen, T. Wang, D.A. Bryant, J.H. Golbeck, and L. McIntosh. Suppressor mutations in the study of Photosystem I biogenesis: sll0088 is a previously unidentified gene involved in reaction center accumulation in Synechocystis sp. Strain PCC 6803. J. Bacteriol. 185:3878-3887.

Bryant, D.A. The beauty in small things revealed. Proc. Natl. Acad. Sci. USA 100:9647-9649.

Huang, C., X. Yuan, J. Zhao, and D.A. Bryant. Kinetic analyses of state transitions of the cyanobacterium Synechococcus sp. PCC 7002 and its mutant strains impaired in electron transport. Biochim. Biophys. Acta 1607:121-130.

Gómez-Lojero, C., B. Pérez-Gómez, G. Shen, W.M. Schluchter, and D.A. Bryant. Interaction of ferredoxin:NADP⁺ oxidoreductase with phycobilisomes and phycobilisome substructures of Synechococcus sp. strain PCC 7002. Biochemistry 42:13800-13811.

Cheng, Z., S. Sattler, H. Maeda, Y. Sakuragi, D.A. Bryant, and D. DellaPenna. Highly divergent methyltransferases catalyze a conserved reaction in tocopherol and plastoquinone synthesis in cyanobacteria and photosynthetic eukaryotes. Plant Cell 15:2343-2356.

Crotty, S., D. Gohara, D.K. Gilligan, S. Karelsky, C.E. Cameron, and R. Andino. Manganese dependent polioviruses with mutations in the highly conserved NTP binding site of the polymerase. J. Virol. 77:5378-5388.

Huang, L., J. Gledhill, and C.E. Cameron. The RNA-dependent RNA polymerase. In: Gene Silencing. (G. Hannon, ed.), pp. 175-203, Cold Spring Harbor Press, Cold Spring Harbor, NY.

Iyer, P.P., S.H. Lawrence, H.P. Yennawar, and J.G. Ferry. Expression, purification, crystallization and preliminary X-ray analysis of phosphotransacetylase from Methanosarcina thermophila. Acta Cryst. D59:1517-1520.

Ljungdahl, L.G., M.W. Adams, L.L. Barton, J.G. Ferry, and M.K. Johnson (eds.). Biochemistry and Physiology of Anaerobic Bacteria, Springer-Verlag, NY.

Ferry, J.G. One-carbon metabolism in methanogenic anaerobes. In: Biochemistry and Physiology of Anaerobic Bacteria. (L. G. Ljungdahl, J. W. Adams, L. L. Barton, J. G. Ferry, and M. K. Johnson, eds.), pp. 143-156, Springer-Verlag, NY.

Frisque, R.J., B. Bollag, S.K. Tyagarajan, and L.H. Kilpatrick. T’ proteins influence JC virus biology. J. NeuroVirol. 9:15-20.

Ricciardiello, L., M. Baglioni, C. Giovannini, M. Pariali, G. Cenacchi, A. Ripalti, M.P. Landini, H. Sawa, K. Nagashima, R.J. Frisque, A. Goel, C.R. Boland, M. Tognon, E. Roda, and F. Bazzoli. Induction of chromosomal instability in colonic cells by the human polyomavirus JC virus. Cancer Res. 63:7256-7262.

Mastro, A.M., C.V. Gay, and D.R. Welch. The skeleton as a unique environment for breast cancer cells. Clin. Exp. Metast. 20:275-284.

Welch, D.R., J.F. Harms, A.M. Mastro, C.V. Gay, and H.J. Donahue. Breast cancer metastasis to bone: Evolving models and research challenges. J. Musculoskel. Neuron. Interact. 3:30-38.

Gay, C.V., B. Zheng, and V.R. Gilman. Co-detection of PTH/PTHrP receptor and tartrate resistant acid phosphatase in osteoclasts. J. Cell. Biochem. 89:902-908.

Donahue, H.J., M.M. Saunders, Z. Li, A.M. Mastro, C.V. Gay, and D.R. Welch. A potential role for gap junctions in breast cancer metastasis to bone. J. Musculoskel. Neuron. Interact. 3:156-161.

Wu, C.-H., Y. Yamaguchi, L.R. Benjamin, M. Horvat-Gordon, J. Washinski, E. Enerly, J. Larsson, A. Lambertsson, H. Handa, and D. Gilmour. NELF and DSIF cause promoter proximal pausing on the hsp70 promoter in Drosophila. Genes & Dev. 17:1402-1414.

Johnson, T.W., S. Naithani, C. Stewart, Jr., B. Zybailov, A.D. Jones, J.H. Golbeck, and P. R. Chitnis. The menD and menE homologues code for 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylate synthase and O-succinylbenzoic acid-CoA ligase in the phylloquinone biosynthetic pathway of Synechocystis sp. PCC 6803. Biochim. Biophys. Acta 1557:67-76.

Antonkine M.L., P. Jordan, P. Fromme, N. Krauß, J.H. Golbeck, and D. Stehlik. Assembly of protein subunits within the stromal ridge of Photosystem I. structural changes between unbound and sequentially-bound PS I-bound polypeptides and correlated changes of the magnetic properties of the terminal iron-sulfur clusters. J. Mol. Biol. 327:671-697.

Salikhov, K.M., Y.N. Pushkar, J.H. Golbeck, and D. Stehlik. Interpretation of multifrequency transient EPR spectra of the P⁺₇₀₀A₀Q_K^- state in photosystem I complexes with a sequential correlated radical pair model: wild-type vs. A₀ mutants. Appl. Magn. Reson. 24:467-482.

Yu, J., G. Shen, T. Wang, D.A. Bryant, J.H. Golbeck, and L. McIntosh. Suppressor mutations in the study of photosystem I biogenesis: sll0088 is a previously unidentified gene involved in reaction center accumulation in Synechocystis sp. PCC 6803. J. Bacteriol. 185:3878-3887.

Xu, W., P. Chitnis, A. Vaieva, A. van der Est, Y.N. Pushkar, M. Krzystyniak, C. Teutloff, S.G. Zech, R. Bittl, D. Stehlik, B. Zybailov, G. Shen, and J.H. Golbeck. Electron transfer in cyanobacterial photosystem I: I. Physiological and spectroscopic characterization of forward electron transfer in a putative electron transfer pathway from A₀ through A₁ to F_X. J. Biol. Chem. 278:27864-27875.

Xu, W., P.R. Chitnis, A. Valieva, A. van der Est, K. Brettel, M. Guergova-Kuras, Y.N. Pushkar, S.G. Zech, D. Stehlik, G. Shen, B. Zybailov, and J.H. Golbeck. Electron transfer in cyanobacterial photosystem I: II. Determination of forward electron transfer rates in a putative electron transfer pathway from A₀ through A₁ to F_X. J. Biol. Chem. 278:27876-27887.

Golbeck, J.H. The binding of cofactors to photosystem I analyzed by spectroscopic and mutagenic methods. Annu. Rev. Biophys. Biomol. Struct. 32:237-256.

Johnson, T.W., and J.H. Golbeck. Biological incorporation of alternative quinines into photosystem I. In: CRC Handbook of Organic Photochemistry and Photobiology. (F. Lenci, ed.), pp. 1-14, CRC Press, Boca Raton, FL.

Frazer, K.A., L. Elnitski, D.M. Church, I. Dubchak, and R.C. Hardison. Cross-species sequence comparisons: A review of methods and available resources. Genome Res. 13:1-12.

Hardison, R.C., K.M. Roskin, S. Yang, M. Diekhans, W.J. Kent, R. Weber, L. Elnitski, J. Li, M. O’Connor, D. Kolbe, S. Schwartz, T.S. Furey, S. Whelan, N. Goldman, A. Smit, W. Miller, F. Chiaromonte, and D. Haussler. Covariation in frequencies of substitution, deletion, transposition, and recombination during eutherian evolution. Genome Res. 13:13-26.

Elnitski, L., R.C. Hardison, J. Li, S. Yang, D. Kolbe, P. Eswara, M.J. O’Connor, S. Schwartz, W. Miller, and F. Chiaromonte. Distinguishing regulatory DNA from neutral sites. Genome Res. 13:64-72.

Schwartz, S., W.J. Kent, A. Smit, Z. Zhang, R. Baertsch, R.C. Hardison, D. Haussler, and W. Miller. Human-mouse alignments with BLASTZ. Genome Res. 13:103-107.

Giardine, B., L. Elnitski, C. Riemer, I. Makalowska, S. Schwartz, W. Miller, and R.C. Hardison. GALA, a database for genomic sequence alignments and annotations. Genome Res. 13:732-741.

Schwartz, S., L. Elnitski, M. Li, M. Weirauch, C. Riemer, A. Smit, NISC Comparative Sequencing Program, E.D. Green, R.C. Hardison, and W. Miller. MultiPipMaker and supporting tools: alignments and analysis of multiple genomic DNA sequences. Nucleic Acids Res. 31:3518-3524.

Bulger, M., D. Schübeler, M.A. Bender, J. Hamilton, C.M. Farrell, R.C. Hardison, and M. Groudine. A complex chromatin landscape revealed by patterns of nuclease sensitivity and histone modification within the mouse b-globin locus. Mol. Cell. Biol. 23:5234-5244.

Hardison, R.C. Primer on comparative genomics. PloS Biol. 1:156-160.

Hardison, R.C. Globin genes: Evolution. In: Encyclopedia of the Human Genome. (D. Cooper and W.-H. Li, eds), pp. 5971-5974, Nature Publishing Group, London.

Hardison, R.C. Fishing for evolutionary clues to globin gene regulation. An “Inside BLOOD” capsule. Blood 101:2451.

Tsukamoto, T., T. Ando, H. Kokubun, H. Watanabe, T. Sato, M. Masada, E. Marchesi, and T-h. Kao. Breakdown of self-incompatibility in a natural population of Petunia axillaris caused by a modifier locus that suppresses the expression of an S-RNase gene. Sex Plant Reprod. 15:255-263.

Wang, Y., X. Wang, A.L. Skirpan, and T-h. Kao. S-RNase-mediated self-incompatibility. J. Exp. Bot. 54:115-122.

Tsukamoto, T., T. Ando, K. Takahashi, T. Omori, H. Watanabe, H. Kokubun, E. Marchesi, T-h. Kao. Breakdown of self-incompatibility in a natural population of Petunia axillaris caused by loss of pollen function. Plant Physiol. 131:1903-1912.

Keiler, K.C. and L. Shapiro. tmRNA in Caulobacter crescentus is cell cycle regulated by temporally controlled transcription and RNA degradation. J. Bacteriol. 185:1825-1830.

Keiler, K.C. and L. Shapiro. tmRNA is required for correct timing of DNA replication in Caulobacter crescentus. J. Bacteriol. 185:573-580.

Sharma, M.R., E.C. Koc, P.P. Datta, T.M. Booth, L.L. Spremulli, and R.K. Agrawal. Structure of the mammalian mitochondrial ribosome reveals an expanded functional role for its component proteins. Cell 115:97-108.

Koc, E.C. and L.L. Spremulli. RNA-binding proteins of mammalian mitochondria. Mitochondrion 2:277-291.

Price, J.C., E.W. Barr, T.E. Glass, C. Krebs, and J.M. Bollinger, Jr. Evidence for hydrogen abstraction from C1 of taurine by the high-spin Fe(IV) intermediate detected during oxygen activation by taurine:a-ketoglutarate dioxygenase (TauD). J. Am. Chem. Soc. 125:13008-13009.

Price, J.C., E.W. Barr, B. Tirupati, J.M. Bollinger, Jr. and C. Krebs. The first direct characterization of a high-valent iron intermediate in the reaction of an a-ketoglutarate-dependent dioxygenase: A high-spin Fe(IV) complex in taurine/a-ketoglutarate dioxygenase (TauD) from Escherichia coli. Biochemistry 42:7497-7508.

Hurshman, A.R., C. Krebs, D.E. Edmondson, and M.A. Marletta. Ability of tetrahydrobiopterin analogues to support catalysis by inducible nitric oxide synthase: Formation of a pterin radical is required for enzyme activity. Biochemistry 42:13287-13303.

Chaudhuri, P., E. Rentschler, F. Birkelbach, C. Krebs, E. Bill, T. Weyhermüller, and U. Flörke. Ground spin state variation in carboxylate-bridged tetranuclear [Fe₂Mn₂O₂]⁸⁺ cores and a comparison with their [Fe₄O₂]⁸⁺ and [Mn₄O₂]⁸⁺ congeners. Eur. J. Inorg. Chem. 2003:541-555.

Baldwin, J., C. Krebs, L. Saleh, M. Stelling, B.H. Huynh, J.M. Bollinger, Jr. and P.J. Riggs-Gelasco. Structural characterization of the peroxodiiron(III) intermediate generated during oxygen activation by the W48A/D84E variant of ribonucleotide reductase protein R2 from Escherichia coli. Biochemistry 42:13269-13279.

Broderick, J.B., C. Walsby, W.E. Broderick, C. Krebs, W. Hong, D. Ortillo, J. Cheek, B.H. Huynh, and B.M. Hoffman. Paramagnetic resonance in mechanistic studies of Fe-S/radical enzymes. In: Paramagnetic Resonance of Metallobiomolecules. (J. Telser, ed.), pp 113-127, American Chemical Society, Washington, D. C.

Ramos, E., M. Price, M. Rohrbaugh, and Z.-C. Lai. Identifying functional cis-acting regulatory modules of the yan gene in Drosophila melanogaster. Dev. Genes Evol. 213:83-89.

Li, Y., M. Fetchko, Z.-C. Lai, and N.E. Baker. Scabrous and Gp150 are endosomal proteins that regulate Notch activity. Development 130:2819-2827.

Lesk, A.M. Hydrophobicity ­ getting into hot water. Biophys. Chem. 105:199-182.

Lesk, A.M. From electrons to proteins and back again. Int. J. Quantum Chem. 95:678-682.

Whisstock, J.C. and A.M. Lesk. Prediction of protein function from protein sequence and structure. Q. Rev. Biophys. 36:307-340.

Fritschy, J.-M., C. Schweizer, I. Brünig, and B. Lüscher. Pre- and post-synaptic mechanisms regulating the clustering of type A g-aminobutyric acid receptors (GABA_A receptors). Biochem. Soc. T. 31:889-892.

Schweizer, C., S. Balsiger, H. Bluethmann, I.M. Mansuy, J.-M. Fritschy. H. Mohler, and B. Lüscher. The g2 subunit of GABA_A receptors is required for maintenance of receptors at mature synapses. Mol. Cell. Neurosci. 24:442-450.

Dohi, K., W.J. Kraemer, and A.M. Mastro. Exercise increases prolactin receptor expression on human lymphocytes. J. Appl. Physiol. 94:518-524.

Mastro, A.M., C.V. Gay, and D.R. Welch. The skeleton as a unique environment for breast cancer cells. Clin. Exp. Metast. 20:275-284.

Welch, D.R., J.F. Harms, A.M. Mastro, C.V. Gay, and H.J. Donahue. Breast cancer metastasis to bone: Evolving models and research challenges. J. Musculoskel. Neuron. Interact. 3:30-38.

Miles, M.P., W.J. Kraemer, B.C. Nindl, D.S. Grove, S.K. Leach, K. Dohi, J.O. Marx, J.S. Volek, and A.M. Mastro. Strength, workload, anaerobic intensity and the immune response to resistance exercise in women. Acta Physiol. Scand. 178:155-163.

Donahue, H.J., M.M. Saunders, Z. Li, A.M. Mastro, C.V. Gay, and D.R. Welch. A potential role for gap junctions in breast cancer metastasis to bone. J. Musculoskel. Neuron. Interact. 3:156-161.

Kraemer, W.J., M.R. Rubin, K. Haäkkinen, B.C. Nindi, J.O. Marx, J.S. Volek, D.N. French, A.L. Gómez, M.J. Sharman, T. Scheett, N.A. Ratamess, M.P. Miles, A.M. Mastro, J.L. VanHeest, C.M. Maresh, J.R. Welsch, and W.C. Hymer. Influence of muscle strength and total work on exercise-induced plasma growth hormone isoforms in women. J. Sci. Med. Sport 6:295-306.

Molls, R.R., N. Ahluwalia, T. Fick, A.M. Mastro, D. Wagstaff, G. Handte, and R. Ball. Inter- and intra-individual variation in tests of cell-mediated immunity in young and old women. Mech. Ageing Dev. 124:619-627.

Panteleyev, A.A., P.J. Mitchell, R. Paus, and A.M. Christiano. Expression patterns of the transcription factor AP-2a during hair follicle morphogenesis and cycling. J. Invest. Dermatol. 121:13-19.

Artsimovitch, I., V. Svetlov, K.S. Murakami, and R. Landick. Co-overexpression of Escherichia coli RNA polymerase subunts allows isolation and analysis of mutant enzymes lacking lineage-specific sequence insertions. J. Biol. Chem. 278:12344-12355.

Macchi, R., L. Montesissa, K. Murakami, A. Ishihama, V. de Lorenzo, and G. Bertoni. Recruitment of s⁵⁴-RNA polymerase to the Pu promoter of Pseudomonas putida through integration host factor-mediated positioning switch of a subunit carboxyl-terminal domain on an UP-like element. J. Biol. Chem. 278:27695-27702.

Murakami, K.S. and S.A. Darst. Bacterial RNA polymerases: the whole story. Curr. Opin. Struct. Biol. 13:31-39.

Murakami, K.S., S. Masuda, and S.A. Darst. Crystallographic analysis of Thermus aquaticus RNA polymerase holoenzyme and a holoenzyme/promoter DNA complex. Methods Enzymol. 370:42-53.

Nekrutenko, A., W.-Y. Chung, and W.-H. Li. ETOPE: Evolutionary test of predicted exons. Nucleic Acids Res. 31:3564-3567.

Thomas, M.A., B. Weston, M. Joseph, W. Wu, A. Nekrutenko, and P.J. Tonellato. Evolutionary dynamics of oncogenes and tumor suppressor genes: higher intensities of purifying selection than other genes. Mol. Biol. Evol. 20:964-968.

Nekrutenko, A., W.-Y. Chung, and W.-H. Li. An evolutionary approach reveals a high protein-coding capacity of the human genome. Trends Genet. 19:306-310.

Nekrutenko, A. and R.J. Baker. Subgenome-specific markers in allopolyploid cotton Gossypium hirsutum: implications for evolutionary analysis of polyploids. Gene 306:99-103.

Li, W.-H., Z. Gu, A.R.O. Cavalcanti, and A. Nekrutenko. Detection of gene duplications and block duplications in eukaryotic genomes. J. Struct. Funct. Genomics 3:27-34.

Li., W.-H., Z. Gu, A.R.O. Cavalcanti, and A. Nekrutenko. Detection of gene duplications and block duplications in eukaryotic genomes. In: Genome Evolution: Gene and Genome Duplications and the Origin of Novel Gene Functions. (A. Meyer and Y. Van de Peer, eds.), pp. 27-34, Kluwer Academic Publishers, Netherlands.

Spear, E.D. and D.T.W. Ng. Stress tolerance of misfolded carboxypeptidase Y requires maintenance of protein trafficking and degradative pathways. Mol. Biol. Cell. 14:2756-2767.

Wang, Y.-K., S. Park, B.T. Nixon, and T.R. Hoover. Nucleotide dependent conformational changes in the s⁵⁴-dependent activator DctD. J. Bacteriol. 185:6215-6219.

S.-Y. Lee, A. De La Torre, D. Yan, S. Kustu, B.T. Nixon, and D.E. Wemmer. Regulation of the transcriptional activator NtrC1: structural studies of the regulatory and AAA⁺ ATPase domains. Genes & Dev. 17:2552-2563.

Prabhu, K.S., P.V. Reddy, A.D. Liken, E.C. Jones, H.P. Yennawar, and C.C. Reddy. Identification, characterization, and properties of a class alpha microsomal glutathione S-transferase. Adv. Exp. Med. Biol. 525:189-192.

Pazur, J.H. The biosynthesis and properties of anti-carbohydrate antibodies. In: Studies in Natural Products Chemistry. (Atta-ur-Rahman, ed.), pp. 521-565, Elsevier B. V., Amsterdam.

Kou, H., J.D. Irvin, K.L. Huisinga, M. Mitra, and B.F. Pugh. Structural and functional analysis of mutations along the crystallographic dimer interface of the yeast TATA binding protein. Mol. Cell. Biol. 23:3186-3201.

Reese, J.C. Basal transcription factors. Curr. Opin. Genet. Dev. 13:114-118.

Sharma, V.M., B. Li, and J.C. Reese. SWI/SNF-dependent chromatin remodeling of RNR3 requires TAF_IIs and the general transcription machinery. Genes & Dev. 17:502-515.

Reese, J.C. and M.R. Green. Functional analysis of TFIID components using conditional mutants. Methods Enzymol. 370:415-430.

Callahan, M.K., P.M. Popernack, S. Tsutsui, L. Truong, R.A. Schlegel, and A.J. Henderson. Phosphatidylserine on HIV envelope is a cofactor for infection of monocytic cells. J. Immunol. 170:4840-4845.

Callahan, M.K., M.S. Halleck, S. Krahling, A.J. Henderson, P. Williamson, and R.A. Schlegel. Phosphatidylserine expression and phagocytosis of apoptotic thymocytes during differentiation of monocytic cells. J. Leukoc. Biol. 74:846-856.

Schlegel, R.A., M.S. Halleck, and P. Williamson. Phospholipid transporters in the brain. In: Nutrition and Biochemistry of Phospholipids. (B. F. Szuhaj and W. van Nieuwenhuyzen, eds.), pp. 1-13, American Oil Chemists Society Press, Champaign, IL.

Boudreault, A.A., D. Cronier, W. Selleck, N. Lacoste, R.T. Utley, S. Allard, J. Savard, W.S. Lane, S. Tan, and J. Côte. Yeast enhancer of polycomb defines global Esa1-dependent acetylation of chromatin. Genes & Dev. 17:1415-1428.

Bleichenbacher, M., S. Tan, and T.J. Richmond. Novel interactions between the components of human and yeast TFIIA/TBP/DNA complexes. J. Mol. Biol. 332:783-793.

Spann, K.M., P.L. Collins, and M.N. Teng. Genetic recombination during coinfection of two mutants of human respiratory syncytial virus. J. Virol. 77:11201-11211.

Thomas, G.H. and D.E. Discher. Conformational compliance of spectrins in membrane deformation, morphogenesis, and signaling. In: Elastomeric Proteins. (P. R. Shewry, A. Tatham, and A. J. Bailey, eds.), pp. 213-241, Cambridge University Press, Cambridge, U. K.

Banci, L., I. Bartalesi, S. Ciofi-Baffoni, and M. Tien. Unfolding and pH studies on manganese peroxidase: Role of heme and calcium on secondary structure stability. Biopolymers 72:38-47.

Varela, E. and M. Tien. Effect of pH and oxalate on hydroquinone-derived hydroxyl radical formation during brown rot wood degradation. Appl. Envir. Microbiol. 69:6025-6031.

Varela, E., T. Mester, and M. Tien. Culture conditions affecting biodegradation components of the brown-rot fungus Gloeophyllum trabeum. Arch. Microbiol. 180:251-256.

Iyer, P.P., S.H. Lawrence, H.P. Yennawar, and J.G. Ferry. Expression, purification, crystallization and preliminary X-ray analysis of phosphotransacetylase from Methanosarcina thermophila. Acta Cryst. D59:1517-1520.

Prabhu, K.S., P.V. Reddy, A.D. Liken, E.C. Jones, H.P. Yennawar, and C.C. Reddy. Identification, characterization, and properties of a class alpha microsomal glutathione S-transferase. Adv. Exp. Med. Biol. 525:189-192.

Conway, M.E., N. Yennawar, R. Wallin, L.B. Poole, S.M. Hutson. Human mitochondrial branched chain aminotransferase: structural basis for substrate specificity and role of redox active cysteines. Biochim. Biophys. Acta 1647:61-65.